Master of Science in Zoology. The graduate program is designed to develop the ability of students to undertake critical inquiry and independent research for the advancement of knowledge in zoology as well as develop professional leadership in biological sciences.

Master of Science in Wildlife. A joint program of the Institute of Biological Sciences, CAS and Forest Biological Sciences, CFNR. The program was able to expand the fields of specialization from the original 2 to 8 fields namely: vertebrate pests, physiology, parasitology, limnology, invertebrate zoology, vertebrate zoology and wildlife biology.

Master of Science in Botany. The main goal is to develop the ability of the students to undertake critical inquiry and independent research, to widen their field of knowledge as well as to develop their professional leadership. The fields of specialization are: economic botany, morphology/anatomy, systematics, plant physiology, pollination biology, phycology and plant ecology.

Master of Science in Genetics. The program furnishes the students with a finer background in biology with specialization in genetics. It prepares the student for competence in instruction, research and extension. An applicant for admission must hold a B.S. degree preferably in the biological sciences.

Master of Science in Microbiology. The program aims to produce highly qualified graduates needed primarily in learning and research institutions and industries. The graduate shall be equipped with comprehensive knowledge and skills in microbiology supported by conception in other fields (molecular biology, biochemistry, statistics, biotechnology and genetics).

Master of Science in Statistics. The program aims to produce quality graduates with adequate and balanced training in both statistical theory and applications. The program requires a minimum of 24 units of course work, 1 unit of seminar, and 6 units of thesis. At least 15 units must be in major field and at least 9 units in minor field.

Master of Science in Mathematics. The program involves course work and the conduct and presentation of a research thesis. The program consist of 31 units, broken down as follows: 15 units core courses, 9 units cognate courses, 1 unit graduate seminar and 6 units thesis.

Master of Arts in Sociology. The program, aside form the quantitative paradigms in social science, addresses the current developments in the field of sociology and enhances the competence in the sub-areas of organization, social psychology and demography.

Master of Science in Computer Science. The program addresses the need for advanced formal training of professional leaders in computer science. Candidates are expected to acquire a broad knowledge of the discipline and related fields like statistics, economics, mathematics, management, and other sciences like environmental science, agriculture and forestry. This program has attracted not only Filipino students but also a number of students from Southeast Asia and the Middle East.

Master of Information Technology. The program is designed to further train IT practitioners by providing them with advanced knowledge in IT enabling them to design and implement IT solutions in their workplace. Graduates of the program are expected to be able to: (a) demonstrate in-depth knowledge of technical concepts pertaining to information technology; (b) apply the latest advances in information technology in their field of work; and (c) undertake the proper design, implementation and maintenance of production-grade IT-based solutions.

Master of Arts in Communication Arts (MACA) and Master in Communication Arts (MCA). These are the two components of the same graduate program; the MACA being the thesis option and the MCA, the non-thesis option. The courses are designed not only for AB Communication Arts graduates but also for teachers, writers, information officers, and other communication practitioners. The courses will train them to be communicators with a strong generalist orientation balanced with advanced training in the various forms and styles of oral and written communication.

Master of Science in Biochemistry. The program equips the student with a comprehensive background in the major areas of Biochemistry. A minimum of two semesters of residence and 25 units of course work are required. Cognate courses may be in any of the following areas: chemistry, entomology, food science, genetics, horticulture, microbiology, nutrition or physiology.

Master of Science in Agricultural Chemistry. The program allows the student to take graduate courses and do research work relevant to Agricultural Chemistry. A minimum of 24 units of course work, with at least 18 units in the graduate level, and 1 unit of graduate seminar are required.

Master of Science in Chemistry. The program allows the student to acquire a strong and comprehensive background in the traditional areas of chemistry at the master’s level with specialization in a particular branch of chemistry. This program also equips the graduate with the principles and tools in order to (a) teach chemistry courses at the undergraduate and graduate levels, and (b) undertake and supervise research institutions and industry. A minimum of four semesters of residence is required.